Fitness data for PS417_19375 in Pseudomonas simiae WCS417

LysR family transcriptional regulator
SEED: LysR family transcriptional regulator clustered with dicarboxylate transport

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
phage P. simiae ORA MOI 10 -0.7 -2.1 compare
soil soil sample 6; outgrowth in LB -0.6 -2.0 compare
stress methylglyoxal 0.032 vol% -0.6 -1.6 compare
phage P. simiae Grant Run MOI 10 -0.6 -1.8 compare
phage P. simiae OR Antrim MOI 1 -0.5 -1.8 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -0.5 -2.2 compare
phage P. simiae Grant Run MOI 0.1 -0.5 -1.5 compare
stress 6-methoxy-2(3H)-benzoxazolone 1.2 mM -0.5 -2.0 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels -0.5 -2.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -1.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.4 +1.4 compare
solid stress Fraxetin 3 mM; solid stress +0.4 +1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +2.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.5 +1.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.6 +2.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 +3.2 compare
carbon source L-Valine (C) +0.8 +3.0 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.9 +1.6 compare