Fitness data for PS417_19225 in Pseudomonas simiae WCS417

FAD-dependent cmnm(5)s(2)U34 oxidoreductase
SEED: 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
agar plate interaction control Taped volatile agar plate with no fungus -1.0 -2.8 compare
carbon source Carbon source L-Ornithine 10 mM -0.9 -4.5 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.8 -4.9 compare
carbon source Carbon source D-Mannitol 10 mM -0.7 -3.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -3.6 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -3.2 compare
liquid stress 80% Methanol 3 mM; liquid stress -0.7 -4.0 compare
soil soil sample 5; outgrowth in LB -0.7 -2.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -2.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.7 -2.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -2.5 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.6 -2.9 compare
solid stress Fraxetin 3 mM; solid stress -0.6 -2.1 compare
solid stress Scopoletin 2 mM; solid stress -0.6 -2.7 compare
stress Dimethyl Sulfoxide 5 vol% -0.6 -3.1 compare
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.6 -2.5 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -0.6 -3.1 compare
stress Nickel (II) chloride 1 mM -0.6 -2.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 +1.5 compare