Fitness data for PS417_17835 in Pseudomonas simiae WCS417

2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
SEED: 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-)
KEGG: 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
rhizosphere rhizosphere sample 2; outgrowth in LB -1.6 -2.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.5 -1.6 compare
stress Nalidixic 0.015 mg/ml -1.4 -4.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.2 -1.9 compare
soil soil sample 2; outgrowth in LB -1.1 -1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.0 -2.2 compare
phage JP1 MOI 1 -1.0 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.0 -3.0 compare
carbon source Carbon source D-Mannitol 2.5 mM -0.9 -1.8 compare
supernatant control Vogels_fungal_media; pH 5.5 -0.9 -3.0 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 -2.3 compare
no phage control Time6-nophage -0.9 -2.2 compare
rhizosphere rhizosphere sample 1; outgrowth in LB -0.9 -1.7 compare
phage P. simiae ORA MOI 0.1 -0.9 -1.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -1.3 compare
stress Lomefloxacin 0.0001 mM +0.9 +3.3 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +1.0 +1.8 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +1.0 +1.1 compare
phage JP1 MOI 0.1 +1.1 +2.2 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +1.3 +2.0 compare