Fitness data for PS417_17630 in Pseudomonas simiae WCS417

RNA polymerase sigma factor
SEED: Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.7 -1.9 compare
phage JP1 MOI 10 -1.6 -1.8 compare
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -1.2 -1.2 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.2 -1.4 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.1 -2.0 compare
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -1.1 -2.3 compare
soil soil sample 2; outgrowth in LB -1.1 -1.7 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.0 -1.3 compare
phage moi 100 Time6-phageFRS -1.0 -1.0 compare
motility inner cut, LB soft agar motility assay -0.9 -1.4 compare
supernatant control Vogels_fungal_media 0.1X +0.8 +2.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.9 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.0 +1.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +1.0 +1.8 compare
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) +1.1 +3.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.1 +1.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.1 +2.0 compare
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +1.1 +2.9 compare
phage P. simiae Grant Run MOI 10 +1.2 +1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.3 +1.1 compare