Fitness data for PS417_17070 in Pseudomonas simiae WCS417

RNA polymerase subunit sigma-24
SEED: RNA polymerase sigma-54 factor RpoN
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.4)


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group condition fitness t score  
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.9 -2.6 compare
phage P. simiae OR Antrim MOI 10 -2.9 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -2.5 -2.2 compare
soil soil sample 5; outgrowth in LB -2.4 -1.7 compare
solid stress Fraxetin 2 mM; solid stress -2.3 -2.1 compare
soil soil sample 7; outgrowth in LB -2.3 -1.7 compare
liquid stress Fraxetin 2 mM; liquid stress -2.2 -2.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.9 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.9 -1.8 compare
carbon source L-Asparagine (C) -1.8 -2.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.6 -2.3 compare
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -1.6 -1.9 compare
stress Gentamicin 0.008 mg/ml -1.6 -1.4 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -1.5 -1.9 compare
soil soil sample 4; outgrowth in LB -1.5 -1.6 compare
liquid stress Scopoletin 2 mM; liquid stress -1.4 -2.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.4 -1.4 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +1.4 +2.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +1.4 +2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.6 +2.5 compare