Fitness data for PS417_16520 in Pseudomonas simiae WCS417

cold-shock protein
SEED: Cold shock protein CspD
KEGG: cold shock protein (beta-ribbon, CspA family)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.2)


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group condition fitness t score  
root root sample 6; outgrowth in LB -2.9 -2.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.4 -1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.0 -1.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.8 -1.9 compare
soil soil sample 2; outgrowth in LB -1.8 -1.5 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.7 -1.4 compare
rhizosphere rhizosphere sample 1; outgrowth in LB -1.5 -1.4 compare
stress Nalidixic 0.025 mg/ml -1.5 -2.1 compare
solid stress 80% Methanol 1 mM; solid stress -1.5 -2.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.3 -1.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.3 -1.4 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.3 -1.4 compare
carbon source 2-Deoxy-D-Ribose 10 mM (C) -1.3 -1.9 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.3 -1.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.2 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.2 -2.0 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +1.3 +2.4 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +1.4 +0.9 compare
supernatant control Vogels_fungal_media 0.1X +1.5 +2.7 compare
stress Doxycycline hyclate 0.001 mg/ml +1.5 +2.0 compare