Fitness data for PS417_16285 in Pseudomonas simiae WCS417

diguanylate cyclase
SEED: diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
motility inner cut, LB soft agar motility assay -0.6 -2.6 compare
phage P. simiae OR Antrim MOI 10 -0.5 -2.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -1.7 compare
phage P. simiae OR1 MOI 0.1 -0.5 -1.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -2.2 compare
soil soil sample 5; outgrowth in LB -0.4 -1.4 compare
carbon source Fumarate (C) -0.4 -2.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.4 -2.0 compare
carbon source D-Xylose (C) -0.4 -2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -2.4 compare
carbon source L-Alanine (C) +0.4 +2.4 compare
solid stress Scopoletin 2 mM; solid stress +0.4 +2.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +1.7 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +2.4 compare
stress Phosphomycin 0.001 mg/ml +0.6 +1.1 compare
carbon source 2'-Deoxyinosine 5 mM (C) +0.6 +2.3 compare
stress Phosphomycin 0.003 mg/ml +0.6 +1.4 compare
stress Phosphomycin 0.002 mg/ml +0.7 +1.6 compare
phage JP1 MOI 0.1 +0.8 +2.3 compare