Fitness data for PS417_16255 in Pseudomonas simiae WCS417

RNA polymerase sigma factor
SEED: FIG006045: Sigma factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
carbon source L-Valine (C) -1.3 -2.2 compare
phage P. simiae OR Antrim MOI 1 -1.2 -1.1 compare
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB -1.1 -1.3 compare
carbon source L-Glutamine (C) -0.9 -2.2 compare
carbon source Cytidine (C) -0.9 -2.0 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.9 -1.2 compare
stress TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2 -0.9 -1.4 compare
carbon source L-Histidine (C) -0.8 -2.2 compare
solid stress Scopoletin 0.5 mM; solid stress -0.8 -1.2 compare
agar plate interaction control Taped volatile agar plate with no fungus -0.8 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8 -1.6 compare
liquid stress Fraxetin 3 mM; liquid stress +0.8 +4.0 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.8 +1.5 compare
exudates RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x +0.9 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 +1.9 compare
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.9 +1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.1 +1.8 compare
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x +1.2 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.5 +2.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.7 +1.9 compare