Fitness data for PS417_15815 in Pseudomonas simiae WCS417

hydrolase
SEED: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
rhizosphere rhizosphere sample 1; outgrowth in LB -0.7 -2.1 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.5 -1.2 compare
carbon source 2'-Deoxyinosine 5 mM (C) -0.5 -1.6 compare
phage JP1 MOI 10 -0.5 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.4 -1.5 compare
soil soil sample 3; outgrowth in LB -0.4 -1.1 compare
r2a control with 0.2% methanol R2A control with 0.2% methanol -0.4 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.4 +1.8 compare
carbon source L-Valine (C) +0.4 +1.1 compare
stress TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1 +0.5 +2.5 compare
phage JP1 MOI 1 +0.5 +1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.5 +1.7 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.6 +2.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 +3.7 compare
root root sample 6; outgrowth in LB +0.7 +1.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.0 +2.0 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.5 +1.6 compare