Fitness data for PS417_15305 in Pseudomonas simiae WCS417

type VI secretion protein
SEED: Uncharacterized protein ImpH/VasB
KEGG: type VI secretion system protein ImpH

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
carbon source Carbon source D-Mannitol 2.5 mM -1.3 -2.4 compare
stress Polymyxin B sulfate 0.006 mg/ml -1.2 -1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.1 -0.9 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.0 -2.1 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -1.0 -1.7 compare
agar plate interaction control Taped volatile agar plate with no fungus -1.0 -1.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -0.6 compare
phage P. simiae Grant Run MOI 0.1 -0.9 -1.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 -2.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.9 -1.8 compare
r2a control R2A control -0.9 -1.9 compare
phage P. simiae Grant Run MOI 10 -0.9 -1.0 compare
phage JP1 MOI 0.1 +0.9 +2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.9 +1.3 compare
liquid stress 80% Methanol 3 mM; liquid stress +0.9 +2.3 compare
stress LB_noSalt with Chloride 1100 mM +1.0 +2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +1.0 +2.5 compare
soil soil sample 5; outgrowth in LB +1.2 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.4 +1.3 compare
seeds Growth on radish seeds for 72 hours +1.4 +2.4 compare