Fitness data for PS417_15295 in Pseudomonas simiae WCS417

Fis family transcriptional regulator
SEED: Sigma-54 dependent transcriptional regulator
KEGG: sigma-54 dependent transcriptional regulator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 -1.9 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.0 -2.5 compare
carbon source 2'-Deoxyinosine 5 mM (C) -0.9 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.9 -2.7 compare
phage P. simiae OR Antrim MOI 0.1 -0.7 -2.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.7 -2.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-tyrosine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.7 -3.2 compare
phage JP1 MOI 0.1 -0.6 -1.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -1.1 compare
seeds Growth on radish seeds for 72 hours -0.5 -1.6 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.5 -2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +1.0 compare
liquid stress Fraxetin 3 mM; liquid stress +0.5 +1.8 compare
phage P. simiae Grant Run MOI 0.1 +0.5 +1.8 compare
stress Nalidixic 0.015 mg/ml +0.5 +2.4 compare
stress A22 0.16 mg/ml +0.5 +2.6 compare
stress Dimethyl Sulfoxide 4 vol% +0.6 +3.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +2.0 compare
phage P. simiae OR Antrim MOI 0.1 +0.6 +2.2 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.8 +1.1 compare