Fitness data for PS417_15200 in Pseudomonas simiae WCS417

protein activator of alkane oxidation PraB
SEED: protein activator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
rhizosphere rhizosphere sample 2; outgrowth in LB -2.2 -2.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.6 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.4 -1.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 -2.0 compare
motility outer cut, LB soft agar motility assay -1.1 -2.3 compare
rhizosphere rhizosphere sample 8; outgrowth in LB -1.1 -1.8 compare
phage JP1 MOI 0.1 -1.0 -1.4 compare
seeds Growth on radish seeds for 72 hours -1.0 -1.3 compare
stress Nalidixic 0.025 mg/ml -1.0 -2.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.9 -2.1 compare
liquid stress Fraxetin 3 mM; liquid stress -0.9 -2.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.9 +2.2 compare
carbon source L-Valine (C) +1.0 +1.7 compare
agar plate interaction control Taped volatile agar plate with no fungus +1.0 +1.6 compare
soil soil sample 5; outgrowth in LB +1.1 +2.4 compare
stress LB_noSalt with Chloride 500 mM +1.1 +2.1 compare
phage P. simiae OR1 MOI 0.1 +1.1 +1.8 compare
phage P. simiae ORA MOI 0.1 +1.2 +2.2 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +1.2 +2.1 compare
phage P. simiae OR Antrim MOI 1 +1.6 +5.1 compare