Fitness data for PS417_14900 in Pseudomonas simiae WCS417

C4-dicarboxylate ABC transporter permease
SEED: TRAP-type C4-dicarboxylate transport system, large permease component
KEGG: C4-dicarboxylate transporter, DctM subunit

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
soil soil sample 2; outgrowth in LB -0.7 -2.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.5 compare
phage P. simiae OR1 MOI 0.1 -0.5 -1.4 compare
seeds Growth on radish seeds for 72 hours -0.5 -1.9 compare
stress Gentamicin 0.008 mg/ml -0.5 -1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -1.6 compare
seeds Growth on radish seeds for 72 hours -0.5 -1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -1.3 compare
phage P. simiae OR Antrim MOI 1 -0.4 -2.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.4 -1.7 compare
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.4 +2.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.4 +1.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB +0.4 +1.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.4 +1.6 compare
carbon source Carbon source D-Mannitol 2.5 mM +0.4 +2.4 compare
root root sample 6; outgrowth in LB +0.5 +2.1 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.5 +2.5 compare
soil soil sample 7; outgrowth in LB +0.5 +1.7 compare
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB +0.6 +2.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 +1.9 compare