Fitness data for PS417_00150 in Pseudomonas simiae WCS417

4,5-dioxygenase
SEED: Aromatic ring-cleaving dioxygenase
KEGG: DOPA 4,5-dioxygenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
rhizosphere rhizosphere sample 2; outgrowth in LB -0.9 -2.7 compare
carbon source D-Galactose (C) -0.8 -3.8 compare
carbon source D-Galactose (C) -0.8 -3.0 compare
root root sample 6; outgrowth in LB -0.7 -3.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -1.2 compare
phage JP1 MOI 10 -0.6 -1.5 compare
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB -0.6 -2.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -1.7 compare
soil soil sample 8; outgrowth in LB -0.5 -1.6 compare
supernatant control Vogels_fungal_media 0.1X -0.5 -1.9 compare
motility outer cut, LB soft agar motility assay -0.5 -2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -3.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +1.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +1.1 compare
stress methylglyoxal 0.032 vol% +0.6 +1.2 compare
seeds Growth on radish seeds for 72 hours +0.6 +2.1 compare
carbon source L-Valine (C) +0.6 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +1.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.9 +2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.9 +1.6 compare