Fitness data for PS417_14505 in Pseudomonas simiae WCS417

glycogen debranching protein
SEED: Glycogen debranching enzyme (EC 3.2.1.-)
KEGG: glycogen operon protein GlgX

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.1 -2.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 -1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -2.0 compare
seeds Growth on radish seeds for 72 hours -0.9 -2.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -2.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -2.7 compare
carbon source L-Valine (C) -0.7 -1.6 compare
stress LB_noSalt with Chloride 1100 mM -0.7 -3.6 compare
root root sample 6; outgrowth in LB -0.7 -2.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.7 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.2 compare
phage P. simiae OR Antrim MOI 0.1 +0.6 +1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +1.6 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +1.4 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.7 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +3.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 +2.4 compare
supernatant control Vogels_fungal_media 0.1X +0.8 +2.1 compare
phage P. simiae Grant Run MOI 0.1 +0.9 +2.5 compare