Fitness data for PS417_13280 in Pseudomonas simiae WCS417

TonB-dependent receptor
SEED: iron aquisition outermembrane yersiniabactin receptor (FyuA,Psn,pesticin receptor)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
phage JP1 MOI 1 -0.4 -2.1 compare
phage P. simiae ORA MOI 10 -0.4 -2.3 compare
phage P. simiae OR Antrim MOI 0.1 -0.4 -2.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.4 -1.7 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -1.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.4 -2.0 compare
liquid stress 80% Methanol 2 mM; liquid stress +0.4 +1.9 compare
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.4 +1.9 compare
phage P. simiae OR Antrim MOI 1 +0.4 +1.5 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.4 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 +1.2 compare
carbon source L-Leucine (C) +0.4 +2.2 compare
phage P. simiae OR1 MOI 0.1 +0.4 +1.3 compare
no phage control Time6-nophage +0.4 +2.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.4 +2.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +1.2 compare
carbon source 2'-Deoxyinosine 5 mM (C) +0.5 +1.9 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.5 +1.9 compare
carbon source L-Valine (C) +0.7 +2.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.7 +2.1 compare