Fitness data for PS417_12935 in Pseudomonas simiae WCS417

RNA polymerase sigma factor
SEED: RNA polymerase sigma-70 factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
seeds Growth on radish seeds for 72 hours -2.4 -2.3 compare
soil soil sample 7; outgrowth in LB -2.1 -1.9 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.7 -1.7 compare
phage P. simiae Grant Run MOI 10 -1.4 -2.1 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.2 -1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.1 -2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 -1.7 compare
soil soil sample 6; outgrowth in LB -1.0 -1.2 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.0 -1.7 compare
r2a control R2A control -0.9 -1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.9 -1.6 compare
supernatant control Vogels_fungal_media; pH 5.5 -0.9 -2.2 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 -1.9 compare
carbon source octanoate (C) +0.9 +2.4 compare
stress Choline Lysine 25 mM +0.9 +2.7 compare
carbon source NAG (C) +0.9 +3.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.9 +2.3 compare
carbon source L-Asparagine (C) +0.9 +2.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.0 +1.9 compare
carbon source D-Glucose (C) +1.1 +3.5 compare