Fitness data for PS417_12925 in Pseudomonas simiae WCS417

serine dehydratase
SEED: Threonine dehydratase, catabolic (EC 4.3.1.19)
KEGG: threonine dehydratase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
agar plate interaction control Taped volatile agar plate with no fungus -0.8 -1.5 compare
rhizosphere rhizosphere sample 2; outgrowth in LB -0.7 -1.4 compare
carbon source 2-Deoxy-D-Ribose (C) -0.7 -2.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -1.5 compare
seeds Growth on radish seeds for 72 hours -0.7 -2.3 compare
motility inner cut, LB soft agar motility assay -0.7 -2.9 compare
seeds Growth on radish seeds for 72 hours -0.6 -1.7 compare
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.6 -2.2 compare
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.6 -1.9 compare
carbon source 2'-Deoxyinosine 5 mM (C) -0.6 -1.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -1.9 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.6 +1.2 compare
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x +0.6 +1.9 compare
soil soil sample 6; outgrowth in LB +0.6 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +1.3 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.7 +1.4 compare
phage P. simiae OR Antrim MOI 0.1 +0.7 +2.4 compare
carbon source L-Valine (C) +0.8 +2.1 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.9 +3.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.5 +1.7 compare