Fitness data for PS417_12570 in Pseudomonas simiae WCS417

AP endonuclease
SEED: Epimerase KguE

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


Add gene:

Or see all 552 experiments or choose conditions

group condition fitness t score  
rhizosphere rhizosphere sample 2; outgrowth in LB -1.4 -2.8 compare
soil soil sample 7; outgrowth in LB -1.3 -2.3 compare
phage P. simiae OR Antrim MOI 10 -1.1 -2.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 -1.5 compare
nitrogen source Adenosine (N) -1.1 -4.9 compare
nitrogen source Urea (N) -1.1 -4.9 compare
exudates RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x -0.7 -2.3 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.7 -1.4 compare
stress TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2 -0.7 -3.2 compare
motility inner cut, LB soft agar motility assay -0.7 -2.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -1.3 compare
carbon source Carbon source L-Ornithine 5 mM -0.7 -1.8 compare
phage P. simiae ORA MOI 10 -0.6 -2.4 compare
phage JP1 MOI 10 +0.7 +1.8 compare
carbon source D-Glucose (C) +0.7 +3.3 compare
phage moi 100 Time6-phageFRS +0.7 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 +3.2 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +4.6 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +1.2 +3.3 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +4.0 +6.5 compare