Fitness data for PS417_12170 in Pseudomonas simiae WCS417

ABC transporter permease
SEED: Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
KEGG: microcin C transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
soil soil sample 4; outgrowth in LB -1.3 -2.9 compare
root root sample 6; outgrowth in LB -0.8 -3.0 compare
soil soil sample 6; outgrowth in LB -0.8 -1.9 compare
soil soil sample 7; outgrowth in LB -0.7 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -2.3 compare
rhizosphere rhizosphere sample 1; outgrowth in LB -0.7 -2.2 compare
phage P. simiae OR Antrim MOI 0.1 -0.6 -2.2 compare
seeds Growth on radish seeds for 72 hours -0.6 -2.3 compare
soil soil sample 3; outgrowth in LB -0.6 -1.7 compare
motility inner cut, LB soft agar motility assay -0.6 -2.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.3 compare
liquid stress Fraxetin 2 mM; liquid stress +0.6 +2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +1.0 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.7 +4.2 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.7 +2.5 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.7 +3.9 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.7 +2.7 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.8 +3.3 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.8 +3.6 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.9 +1.9 compare