Fitness data for PS417_12125 in Pseudomonas simiae WCS417

D-glucosaminate dehydratase (EC 4.3.1.9) (from data)
Original annotation: amino acid deaminase
SEED: D-serine deaminase (EC 4.3.1.18)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source D-Glucosamine Hydrochloride (C) -3.4 -10.1 compare
carbon source D-Glucosamine Hydrochloride (C) -3.2 -8.0 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.3 -2.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -2.1 compare
liquid stress 80% Methanol 2 mM; liquid stress -0.6 -3.1 compare
seeds Growth on radish seeds for 72 hours -0.6 -1.8 compare
stress 6-methoxy-2(3H)-benzoxazolone 1.2 mM +0.5 +1.9 compare
exudates RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x +0.5 +1.6 compare
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.5 +1.7 compare
stress 2-Furfuraldehyde 0.06 vol% +0.6 +2.1 compare
exudates RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x +0.6 +1.6 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.6 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.9 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.7 +2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +2.3 compare
nophagecontrol Only library +0.8 +3.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.8 +1.5 compare
phage JP1 MOI 0.1 +0.8 +2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.9 +1.6 compare