Fitness data for PS417_12050 in Pseudomonas simiae WCS417

short-chain dehydrogenase
SEED: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)
KEGG: 2-deoxy-D-gluconate 3-dehydrogenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
carbon source Xylitol (C) -1.7 -5.7 compare
carbon source Xylitol (C) -1.2 -4.5 compare
motility outer cut, LB soft agar motility assay -1.2 -3.0 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.8 -2.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -2.5 compare
stress Doxycycline hyclate 0.001 mg/ml -0.8 -2.0 compare
phage P. simiae OR Antrim MOI 1 -0.7 -1.6 compare
motility outer cut, LB soft agar motility assay -0.7 -2.0 compare
phage P. simiae ORA MOI 0.1 -0.7 -1.7 compare
supernatant control Vogels_fungal_media 0.1X -0.6 -1.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -1.3 compare
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.6 -2.1 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -1.2 compare
soil soil sample 7; outgrowth in LB +0.6 +1.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +1.9 compare
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.6 +1.7 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.7 +2.4 compare
carbon source L-Valine (C) +0.7 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.8 +0.9 compare