Fitness data for PS417_12030 in Pseudomonas simiae WCS417

LysR family transcriptional regulator
SEED: LysR family transcriptional regulator YnfL

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
motility inner cut, LB soft agar motility assay -1.0 -1.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -1.2 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -0.8 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.8 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.8 -1.5 compare
phage P. simiae OR Antrim MOI 1 -0.7 -1.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.7 -2.1 compare
supernatant control Vogels_fungal_media 0.1X -0.7 -1.3 compare
stress Bacitracin 2 mg/ml -0.7 -2.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.7 -1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.7 -1.5 compare
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.6 -1.4 compare
stress Gentamicin 0.008 mg/ml +0.6 +1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +1.0 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.7 +0.7 compare
soil soil sample 7; outgrowth in LB +0.7 +0.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 +1.4 compare
phage P. simiae OR Antrim MOI 0.1 +1.0 +1.6 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +1.1 +3.4 compare
seeds Growth on radish seeds for 72 hours +1.2 +2.4 compare