Fitness data for PS417_11790 in Pseudomonas simiae WCS417

ABC transporter substrate-binding protein
SEED: Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2)
KEGG: putative spermidine/putrescine transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
soil soil sample 5; outgrowth in LB -0.7 -2.0 compare
phage JP1 MOI 10 -0.7 -2.3 compare
phage JP1 MOI 0.1 -0.6 -2.1 compare
carbon source Carbon source D-Mannitol 2.5 mM -0.6 -2.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -1.6 compare
phage P. simiae ORA MOI 0.1 -0.5 -2.0 compare
agar plate interaction control Taped volatile agar plate with no fungus -0.5 -1.3 compare
stress methylglyoxal 0.032 vol% -0.5 -1.4 compare
stress TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2 -0.4 -2.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -1.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -1.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.4 -1.6 compare
seeds Growth on radish seeds for 72 hours -0.4 -1.5 compare
stress Paraquat dichloride 0.008 mg/ml -0.4 -2.5 compare
phage JP1 MOI 10 +0.4 +1.4 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +1.1 compare
no stress control on plate growth on LB_noSalt plate +0.5 +3.7 compare
carbon source L-Valine (C) +0.6 +2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 +3.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.0 +1.0 compare