Fitness data for PS417_10890 in Pseudomonas simiae WCS417

Deoxyribose 1-dehydrogenase, alpha subunit (from data)
Original annotation: (2Fe-2S)-binding protein
SEED: Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16)
KEGG: isoquinoline 1-oxidoreductase, alpha subunit

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source 2-Deoxy-D-Ribose (C) -4.8 -8.6 compare
carbon source 2-Deoxy-D-Ribose (C) -4.3 -9.5 compare
carbon source 2-Deoxy-D-Ribose 10 mM (C) -3.3 -4.6 compare
carbon source 2-Deoxy-D-Ribose 10 mM (C) -2.9 -7.2 compare
carbon source 2-Deoxy-D-Ribose (C) -2.4 -13.9 compare
carbon source 2-Deoxy-D-Ribose (C) -1.9 -6.9 compare
stress 2-Furfuraldehyde 0.06 vol% -1.0 -5.3 compare
stress 2-Furfuraldehyde 0.03 vol% -0.8 -2.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -1.9 compare
rhizosphere rhizosphere sample 2; outgrowth in LB -0.6 -2.0 compare
phage P. simiae OR Antrim MOI 10 -0.5 -1.7 compare
solid stress Fraxetin 3 mM; solid stress -0.5 -1.2 compare
carbon source 2'-Deoxyinosine 5 mM (C) -0.5 -2.1 compare
no phage control Time6-nophage -0.5 -1.8 compare
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x -0.5 -2.5 compare
soil soil sample 6; outgrowth in LB +0.5 +2.7 compare
soil soil sample 7; outgrowth in LB +0.6 +1.9 compare
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.6 +3.1 compare
phage P. simiae OR Antrim MOI 0.1 +0.7 +2.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.7 +1.2 compare