Fitness data for PS417_10885 in Pseudomonas simiae WCS417

Deoxyribose 1-dehydrogenase, beta subunit (from data)
Original annotation: isoquinoline 1-oxidoreductase
SEED: Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16)
KEGG: isoquinoline 1-oxidoreductase, beta subunit

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source 2-Deoxy-D-Ribose (C) -4.7 -11.4 compare
carbon source 2-Deoxy-D-Ribose (C) -3.9 -10.6 compare
carbon source 2-Deoxy-D-Ribose 10 mM (C) -3.9 -11.5 compare
carbon source 2-Deoxy-D-Ribose 10 mM (C) -3.0 -9.4 compare
carbon source 2-Deoxy-D-Ribose (C) -2.3 -11.0 compare
carbon source 2-Deoxy-D-Ribose (C) -2.2 -11.8 compare
stress 2-Furfuraldehyde 0.03 vol% -1.0 -6.2 compare
stress 2-Furfuraldehyde 0.06 vol% -0.8 -3.9 compare
agar plate interaction control Taped volatile agar plate with no fungus -0.7 -2.2 compare
carbon source 2'-Deoxyinosine 5 mM (C) -0.6 -2.6 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.5 -1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -1.5 compare
carbon source 2'-Deoxyinosine 5 mM (C) -0.5 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -2.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 +1.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +1.2 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.7 compare
phage P. simiae ORA MOI 10 +0.5 +1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +1.6 compare
seeds Growth on radish seeds for 72 hours +0.6 +2.2 compare