Fitness data for PS417_10520 in Pseudomonas simiae WCS417

succinyl-CoA:3-ketoacid-CoA transferase
SEED: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
KEGG: 3-oxoacid CoA-transferase subunit B

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -2.7 -3.0 compare
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -2.5 -4.0 compare
carbon source 2-Deoxy-D-ribonic lithium salt (C) -2.3 -5.8 compare
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -1.7 -3.7 compare
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -1.6 -2.9 compare
carbon source 2'-Deoxyinosine 5 mM (C) -1.6 -2.3 compare
soil soil sample 6; outgrowth in LB -1.3 -2.7 compare
carbon source 2-Deoxy-D-Ribose 10 mM (C) -1.3 -3.2 compare
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -1.2 -3.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 -2.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.1 -3.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.1 -2.5 compare
carbon source L-Valine (C) -1.0 -2.0 compare
motility inner cut, LB soft agar motility assay -1.0 -2.8 compare
carbon source 2-Deoxy-D-Ribose 10 mM (C) -1.0 -3.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.0 -2.1 compare
carbon source L-Leucine (C) -1.0 -4.0 compare
carbon source L-Leucine (C) -1.0 -2.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.1 +2.7 compare