Fitness data for PS417_10445 in Pseudomonas simiae WCS417

LysR family transcriptional regulator
SEED: Transcriptional regulator, LysR family
KEGG: LysR family transcriptional regulator, transcriptional activator of nhaA

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
stress Doxycycline hyclate 0.001 mg/ml -1.9 -2.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.6 -2.1 compare
phage JP1 MOI 10 -1.5 -2.4 compare
seeds Growth on radish seeds for 24 hours -1.1 -1.4 compare
soil soil sample 4; outgrowth in LB -1.0 -1.7 compare
seeds Growth on radish seeds for 72 hours -1.0 -1.5 compare
phage P. simiae ORA MOI 10 -0.9 -1.4 compare
phage P. simiae Grant Run MOI 10 -0.9 -1.8 compare
seeds Growth on radish seeds for 72 hours -0.9 -1.5 compare
stress methylglyoxal 0.032 vol% -0.9 -0.8 compare
carbon source L-Valine (C) -0.9 -1.4 compare
rhizosphere rhizosphere sample 1; outgrowth in LB -0.9 -1.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -1.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -1.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.8 -2.0 compare
supernatant LB 0.5x with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.8 +2.5 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels +0.8 +3.3 compare
carbon source 2'-Deoxyinosine 5 mM (C) +0.9 +1.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.5 +3.1 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +2.7 +1.8 compare