Fitness data for PS417_09645 in Pseudomonas simiae WCS417

TonB-dependent receptor
SEED: TonB-dependent siderophore receptor
KEGG: iron complex outermembrane recepter protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -2.2 compare
agar plate interaction control Taped volatile agar plate with no fungus -0.4 -1.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.3 -2.1 compare
carbon source Putrescine (C) +0.3 +2.2 compare
carbon source D-Glucosamine Hydrochloride (C) +0.3 +2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 +1.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.3 +1.8 compare
carbon source Cytidine (C) +0.3 +2.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +1.8 compare
carbon source Cytidine (C) +0.3 +2.2 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.3 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 +1.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +2.4 compare
carbon source Uridine (C) +0.4 +3.0 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.4 +2.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.4 +2.3 compare
stress methylglyoxal 0.032 vol% +0.4 +2.1 compare
carbon source Uridine (C) +0.4 +3.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.4 +2.5 compare
carbon source L-Valine (C) +0.6 +3.3 compare