Fitness data for PS417_09500 in Pseudomonas simiae WCS417

glucose 1-dehydrogenase
SEED: Short-chain dehydrogenase, associated with 2-hydroxychromene-2-carboxylate isomerase family protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 -3.0 compare
stress methylglyoxal 0.032 vol% -0.5 -1.6 compare
carbon source Glycerol (C) -0.4 -2.6 compare
seeds Growth on radish seeds for 72 hours -0.4 -1.7 compare
stress Benzalkonium Chloride 0.012 mg/ml -0.4 -2.2 compare
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.4 -1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Methionine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.4 -2.0 compare
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.4 +2.5 compare
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x +0.4 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 +1.4 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.4 +1.6 compare
liquid stress 80% Methanol 3 mM; liquid stress +0.4 +2.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +2.0 compare
exudates RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x +0.5 +2.0 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +1.7 compare
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.5 +2.2 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.5 +1.5 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.6 +2.2 compare
supernatant control Vogels_fungal_media 0.1X +0.6 +2.9 compare