Fitness data for PS417_00810 in Pseudomonas simiae WCS417

RNA polymerase sigma factor
SEED: RNA polymerase sigma-E factor
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.1 -3.0 compare
stress Doxycycline hyclate 0.001 mg/ml -1.3 -2.5 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.1 -1.0 compare
carbon source 2'-Deoxyinosine 5 mM (C) -0.9 -1.7 compare
liquid stress Fraxetin 2 mM; liquid stress -0.9 -1.5 compare
carbon source D-Trehalose (C) -0.9 -2.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -1.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.9 -1.7 compare
soil soil sample 3; outgrowth in LB -0.9 -1.4 compare
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x -0.8 -2.9 compare
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.8 -1.7 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.8 +0.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.9 +1.5 compare
stress Phosphomycin 0.001 mg/ml +1.0 +2.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +1.0 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.0 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +1.3 compare
nophagecontrol Only library +1.1 +1.6 compare
agar plate interaction control Taped volatile agar plate with no fungus +1.1 +1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +1.2 +1.8 compare