Fitness data for PS417_08085 in Pseudomonas simiae WCS417

diguanylate cyclase
SEED: Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein
KEGG: peptide/nickel transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -2.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -2.0 compare
phage P. simiae Grant Run MOI 10 -0.4 -2.6 compare
stress TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 1 -0.4 -2.3 compare
carbon source 2'-Deoxyinosine 5 mM (C) -0.4 -2.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -1.8 compare
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.3 +2.0 compare
soil soil sample 5; outgrowth in LB +0.3 +1.3 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +1.8 compare
rhizosphere rhizosphere sample 1; outgrowth in LB +0.4 +1.1 compare
soil soil sample 7; outgrowth in LB +0.4 +1.4 compare
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.4 +2.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.4 +2.2 compare
root root sample 6; outgrowth in LB +0.5 +1.5 compare
soil soil sample 3; outgrowth in LB +0.5 +2.1 compare
soil soil sample 4; outgrowth in LB +0.5 +1.4 compare
soil soil sample 2; outgrowth in LB +0.6 +2.3 compare
rhizosphere rhizosphere sample 2; outgrowth in LB +0.9 +2.5 compare