Fitness data for PS417_08030 in Pseudomonas simiae WCS417

transcriptional regulator
SEED: LysR-family transcriptional regulator YdhB

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
nitrogen source Adenine (N) -3.8 -8.9 compare
rhizosphere rhizosphere sample 1; outgrowth in LB -0.9 -2.2 compare
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.9 -2.8 compare
phage P. simiae OR Antrim MOI 10 -0.8 -2.8 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.8 -2.0 compare
no phage control Time6-nophage -0.7 -1.9 compare
solid stress Fraxetin 3 mM; solid stress -0.7 -1.6 compare
liquid stress 80% Methanol 2 mM; liquid stress -0.7 -2.9 compare
phage P. simiae OR Antrim MOI 1 -0.7 -1.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.6 +2.2 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 +1.9 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.7 +1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.8 +1.6 compare
soil soil sample 5; outgrowth in LB +0.9 +2.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.0 +2.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.1 +2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.4 +1.0 compare