Fitness data for PS417_07265 in Pseudomonas simiae WCS417

2-deoxy-D-ribonate transporter 1 (from data)
Original annotation: membrane protein
SEED: Nitrate/nitrite transporter

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
carbon source 2-Deoxy-D-Ribose (C) -4.5 -11.3 compare
carbon source 2-Deoxy-D-Ribose (C) -4.1 -11.2 compare
carbon source 2-Deoxy-D-Ribose 10 mM (C) -4.1 -15.3 compare
carbon source 2-Deoxy-D-Ribose 10 mM (C) -3.4 -9.6 compare
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -3.3 -12.2 compare
carbon source 2-Deoxy-D-Ribose (C) -3.0 -17.0 compare
carbon source 2-Deoxy-D-Ribose (C) -2.9 -15.0 compare
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -2.8 -13.4 compare
carbon source 2'-Deoxyinosine 5 mM (C) -0.9 -3.7 compare
carbon source 2'-Deoxyinosine 5 mM (C) -0.7 -3.5 compare
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.6 -4.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 +2.3 compare
stress Gentamicin 0.008 mg/ml +0.3 +1.8 compare
seeds Growth on radish seeds for 72 hours +0.4 +1.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +1.6 compare
rhizosphere rhizosphere sample 2; outgrowth in LB +0.4 +1.8 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.4 +1.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +1.8 compare