Fitness data for PS417_07130 in Pseudomonas simiae WCS417

RNA polymerase sigma-H factor AlgU
SEED: Sigma factor RpoE negative regulatory protein RseB precursor
KEGG: sigma-E factor negative regulatory protein RseB

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.8 -2.9 compare
soil soil sample 3; outgrowth in LB -0.8 -3.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.9 compare
phage JP1 MOI 0.1 -0.6 -2.1 compare
phage JP1 MOI 1 -0.5 -2.1 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -3.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 -1.8 compare
motility inner cut, LB soft agar motility assay -0.4 -2.0 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.4 -1.6 compare
liquid stress Fraxetin 2 mM; liquid stress +0.5 +2.5 compare
stress LB_noSalt with Chloride 1100 mM +0.5 +3.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +2.3 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.5 +1.8 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.5 +2.3 compare
stress LB_noSalt with Chloride 1100 mM +0.6 +3.4 compare
liquid stress 80% Methanol 3 mM; liquid stress +0.6 +3.5 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.6 +2.9 compare
liquid stress 80% Methanol 3 mM; liquid stress +0.6 +4.1 compare
soil soil sample 2; outgrowth in LB +0.6 +3.0 compare