Fitness data for PS417_06720 in Pseudomonas simiae WCS417

protocatechuate 3,4-dioxygenase
SEED: Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3)
KEGG: protocatechuate 3,4-dioxygenase, alpha subunit

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


Add gene:

Or see all 552 experiments or choose conditions

group condition fitness t score  
carbon source L-Tryptophan (C) -0.9 -3.4 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.6 -2.7 compare
root root sample 6; outgrowth in LB -0.5 -1.9 compare
phage P. simiae OR1 MOI 0.1 -0.5 -1.6 compare
motility inner cut, LB soft agar motility assay -0.5 -2.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.5 -2.2 compare
soil soil sample 4; outgrowth in LB -0.5 -1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -2.3 compare
phage P. simiae OR Antrim MOI 0.1 -0.4 -1.8 compare
stress Cobalt chloride 0.16 mM +0.4 +1.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +1.6 compare
carbon source L-Valine (C) +0.5 +2.0 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.5 +2.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.5 +1.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +2.0 compare
carbon source L-Valine (C) +0.5 +1.9 compare
carbon source D-Glucosamine Hydrochloride (C) +0.6 +1.2 compare
carbon source D-Glucosamine Hydrochloride (C) +0.7 +1.3 compare