Fitness data for PS417_06420 in Pseudomonas simiae WCS417

ATP-dependent DNA ligase
SEED: ATP-dependent DNA ligase (EC 6.5.1.1) LigC
KEGG: DNA ligase (ATP)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
phage P. simiae OR1 MOI 0.1 -0.8 -2.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -2.2 compare
phage P. simiae Grant Run MOI 10 -0.5 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -2.0 compare
phage P. simiae Grant Run MOI 0.1 -0.4 -1.7 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels -0.4 -2.2 compare
carbon source L-Leucine (C) +0.4 +2.0 compare
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.4 +2.0 compare
stress Doxycycline hyclate 0.001 mg/ml +0.4 +2.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +1.6 compare
stress Neomycin 0.04 mg/ml +0.4 +2.2 compare
supernatant control Vogels_fungal_media 0.1X +0.4 +2.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +1.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +1.3 compare
seeds Growth on radish seeds for 72 hours +0.5 +1.8 compare
liquid stress Fraxetin 3 mM; liquid stress +0.5 +2.6 compare
seeds Growth on radish seeds for 72 hours +0.5 +1.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +1.6 compare
exudates RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x +0.5 +3.1 compare
seeds Growth on radish seeds for 24 hours +0.9 +3.5 compare