Fitness data for PS417_06365 in Pseudomonas simiae WCS417

RNA polymerase sigma factor
SEED: RNA polymerase sigma factor RpoS
KEGG: RNA polymerase nonessential primary-like sigma factor

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 2.6)


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group condition fitness t score  
solid stress Fraxetin 3 mM; solid stress -3.9 -8.0 compare
solid stress Fraxetin 3 mM; solid stress -3.2 -9.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +2.6 +13.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +3.0 +11.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +3.2 +13.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +3.5 +14.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +3.7 +12.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +4.1 +14.4 compare
soil soil sample 2; outgrowth in LB +6.1 +34.7 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +6.9 +30.1 compare
soil soil sample 3; outgrowth in LB +7.2 +44.0 compare
soil soil sample 8; outgrowth in LB +7.4 +42.9 compare
soil soil sample 7; outgrowth in LB +7.4 +30.8 compare
soil soil sample 4; outgrowth in LB +7.6 +36.5 compare
soil soil sample 6; outgrowth in LB +7.6 +48.2 compare
soil soil sample 5; outgrowth in LB +8.3 +56.6 compare
rhizosphere rhizosphere sample 2; outgrowth in LB +9.8 +61.1 compare
rhizosphere rhizosphere sample 8; outgrowth in LB +9.8 +58.0 compare
rhizosphere rhizosphere sample 1; outgrowth in LB +10.0 +68.2 compare
root root sample 6; outgrowth in LB +10.6 +77.3 compare