Fitness data for PS417_06150 in Pseudomonas simiae WCS417

SAM-dependent methlyltransferase
SEED: Ribosomal RNA large subunit methyltransferase A (EC 2.1.1.51)
KEGG: 23S rRNA (guanine745-N1)-methyltransferase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.0)


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group condition fitness t score  
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -2.5 -3.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -1.9 -2.1 compare
no stress control on plate growth on LB_noSalt plate -1.8 -4.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -1.7 -1.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.4 -2.0 compare
solid stress 80% Methanol 2 mM; solid stress -1.2 -1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 -1.5 compare
motility outer cut, LB soft agar motility assay -1.1 -2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.1 -1.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 -1.2 compare
rhizosphere rhizosphere sample 1; outgrowth in LB -1.1 -1.9 compare
solid stress Fraxetin 0.5 mM; solid stress -1.1 -1.7 compare
solid stress Fraxetin 3 mM; solid stress -1.1 -2.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 -1.8 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -1.0 -1.6 compare
phage JP1 MOI 1 +1.2 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.2 +1.3 compare
stress Gentamicin 0.008 mg/ml +1.4 +2.5 compare
phage P. simiae OR1 MOI 0.1 +1.9 +1.9 compare
phage JP1 MOI 0.1 +2.3 +3.9 compare