Fitness data for PS417_05305 in Pseudomonas simiae WCS417

TonB-dependent receptor
SEED: Zinc-regulated outer membrane receptor
KEGG: iron complex outermembrane recepter protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.2)


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group condition fitness t score  
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -1.7 compare
solid stress Scopoletin 0.5 mM; solid stress -0.3 -2.0 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.2 -1.7 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +1.4 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.2 +1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +1.3 compare
phage P. simiae OR1 MOI 0.1 +0.2 +1.4 compare
carbon source 2'-Deoxyinosine 5 mM (C) +0.2 +1.6 compare
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x +0.3 +1.9 compare
seeds Growth on radish seeds for 72 hours +0.3 +1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 +1.9 compare
phage P. simiae Grant Run MOI 10 +0.3 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.3 +1.7 compare
phage P. simiae ORA MOI 0.1 +0.3 +1.7 compare
phage P. simiae OR Antrim MOI 10 +0.3 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 +1.4 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.5 compare
phage P. simiae OR Antrim MOI 1 +0.3 +2.1 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +2.5 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.5 +3.0 compare