Fitness data for PS417_05295 in Pseudomonas simiae WCS417

DeoR faimly transcriptional regulator
SEED: diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -2.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -2.4 compare
phage JP1 MOI 10 -0.4 -1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -1.4 compare
phage Wcs_1 -0.4 -1.7 compare
phage JP1 MOI 0.1 -0.4 -2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -1.8 compare
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.4 +2.2 compare
phage P. simiae OR Antrim MOI 10 +0.4 +1.8 compare
stress Gentamicin 0.008 mg/ml +0.4 +2.5 compare
phage P. simiae OR Antrim MOI 1 +0.4 +1.9 compare
motility outer cut, LB soft agar motility assay +0.4 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.4 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.5 +1.8 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +1.6 compare
carbon source 2'-Deoxyinosine 5 mM (C) +0.6 +2.1 compare
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.6 +3.1 compare
seeds Growth on radish seeds for 72 hours +0.6 +1.4 compare
seeds Growth on radish seeds for 72 hours +0.7 +3.3 compare