Fitness data for PS417_05120 in Pseudomonas simiae WCS417

RNA polymerase subunit sigma-24
SEED: FIG006045: Sigma factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.0)


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group condition fitness t score  
phage JP1 MOI 1 -3.4 -2.6 compare
liquid stress Fraxetin 2 mM; liquid stress -2.2 -2.6 compare
stress methylglyoxal 0.032 vol% -1.4 -1.2 compare
exudates RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x -1.4 -3.1 compare
phage moi 100 Time6-phageFRS -1.2 -2.0 compare
carbon source 2'-Deoxyinosine 5 mM (C) -1.2 -1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.2 -1.3 compare
stress Gentamicin 0.008 mg/ml -1.2 -1.6 compare
phage P. simiae Grant Run MOI 10 -1.1 -1.3 compare
agar plate interaction control Taped volatile agar plate with no fungus -1.1 -1.3 compare
carbon source D-Gluconic Acid (C) -1.1 -2.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.1 -1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 -1.5 compare
phage P. simiae ORA MOI 1 +1.0 +1.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.1 +1.5 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +1.1 +1.8 compare
phage P. simiae Grant Run MOI 0.1 +1.3 +2.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.3 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +1.7 +1.9 compare
root root sample 6; outgrowth in LB +1.7 +3.3 compare