Fitness data for PS417_05100 in Pseudomonas simiae WCS417

RNA polymerase sigma factor
SEED: FIG006045: Sigma factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.3)


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group condition fitness t score  
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -4.3 -1.9 compare
soil soil sample 5; outgrowth in LB -4.1 -2.1 compare
seeds Growth on radish seeds for 24 hours -3.0 -2.8 compare
carbon source Trisodium citrate (C) -2.5 -2.8 compare
carbon source Trisodium citrate (C) -2.4 -3.0 compare
stress Polymyxin B sulfate 0.006 mg/ml -2.1 -2.1 compare
rhizosphere rhizosphere sample 2; outgrowth in LB -2.1 -1.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.9 -1.8 compare
soil soil sample 8; outgrowth in LB -1.8 -1.7 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -1.8 -1.9 compare
seeds Growth on radish seeds for 72 hours -1.7 -1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.6 -1.2 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.5 -1.1 compare
motility_chemotaxis Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.4 -2.0 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.3 -1.7 compare
rhizosphere rhizosphere sample 8; outgrowth in LB -1.3 -1.4 compare
phage P. simiae OR Antrim MOI 10 +1.3 +2.8 compare
carbon source 2-Deoxy-D-Ribose 10 mM (C) +1.4 +2.8 compare
phage P. simiae Grant Run MOI 0.1 +1.6 +3.3 compare
solid stress Fraxetin 3 mM; solid stress +1.6 +4.2 compare