Fitness data for b2745 in Escherichia coli BW25113

truD: tRNA pseudouridine synthase D (NCBI)
SEED: tRNA pseudouridine 13 synthase (EC 4.2.1.-)
KEGG: tRNA pseudouridine synthase D

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
stress LB Aerobic with Ramoplanin 0.000125 mM -1.0 -4.2 compare
phage RB68 -0.7 -3.6 compare
phage Δdbn_10 -0.7 -2.3 compare
gfp_control GFP_control -0.6 -2.2 compare
motility outer cut, LB soft agar motility assay -0.5 -1.6 compare
stress LB Aerobic with Ramoplanin 0.000125 mM -0.5 -2.4 compare
plasmid transformation vcDART vector transformation; liquid outgrowth assay +0.5 +1.5 compare
stress LB Anaerobic with Cephalothin 0.0000078125 mM +0.5 +2.9 compare
stress LB Anaerobic with 2-Mercaptopyridine N-oxide 0.000015625 mM +0.5 +2.7 compare
stress LB Aerobic with Novobiocin 0.0000625 mM +0.6 +2.4 compare
stress 3-methyl-1-butanol 1.25 vol% +0.6 +1.7 compare
stress undecene 5 vol% +0.6 +3.3 compare
plasmid transformation mariner vector transformation; liquid outgrowth assay +0.7 +3.0 compare
plasmid transformation mariner vector transformation; liquid outgrowth assay +0.7 +2.3 compare
no phage control CTR +0.7 +2.7 compare
stress Cisplatin 0.1 mg/ml +0.8 +2.2 compare
plasmid transformation mariner vector transformation; liquid outgrowth assay +0.8 +2.8 compare
stress LB Aerobic with Novobiocin 0.0000625 mM +0.9 +2.9 compare
stress Benzalkonium Chloride 0.004 mg/ml +0.9 +3.9 compare
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM +0.9 +2.1 compare