Fitness data for b2539 in Escherichia coli BW25113

hcaF: 3-phenylpropionate dioxygenase, small (beta) subunit (NCBI)
SEED: 3-phenylpropionate dioxygenase, beta subunit (EC 1.14.12.19)
KEGG: small terminal subunit of phenylpropionate dioxygenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
attachment_assay_attached_sample Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB -1.5 -2.7 compare
control PBS_cage_2_mouse_2_Cecum_40 hr -1.1 -2.0 compare
stress LB Anaerobic with Phenazine ethosulfate 0.000125 mM -0.9 -1.5 compare
stress LB Anaerobic with Nitrofurantoin 0.00003125 mM -0.8 -2.4 compare
motility outer cut, LB soft agar motility assay -0.8 -1.7 compare
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr -0.7 -1.4 compare
motility inner cut, LB soft agar motility assay -0.7 -1.7 compare
phage phage -0.7 -2.3 compare
phage PoolT9D19 +0.6 +1.2 compare
carbon source carbon source D-Mannose 20mM +0.6 +2.7 compare
phage Δdbn_10 +0.6 +1.2 compare
stress Benzalkonium Chloride 0.004 mg/ml +0.7 +1.0 compare
motility inner cut, LB soft agar motility assay +0.7 +1.7 compare
carbon source carbon source D-Mannose 0.5mM +0.7 +1.0 compare
carbon source carbon source D-Glucose 0.25mM +0.8 +1.8 compare
mzaabcde mzaABCDE +0.8 +2.9 compare
phage Ste41 +0.8 +2.4 compare
phage PoolT9D30 +1.3 +2.2 compare
plasmid transformation vcDART vector transformation; liquid outgrowth assay +1.9 +2.4 compare
stress LB Aerobic with 2-Mercaptopyridine N-oxide 0.0000078125 mM +2.3 +1.9 compare