Fitness data for b2212 in Escherichia coli BW25113

alkB: oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions (NCBI)
SEED: Alkylated DNA repair protein AlkB
KEGG: alkylated DNA repair protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
motility inner cut, LB soft agar motility assay -1.1 -2.7 compare
stress methylglyoxal 0.008 vol% -1.1 -2.7 compare
stress 3-methyl-1-butanol 1.25 vol% -0.9 -2.9 compare
predation 6 hr rep1_HD100_10fold_dilution_grewON -0.9 -1.0 compare
stress LB Anaerobic with Furaltadone 0.000015625 mM -0.8 -2.0 compare
phage Lambda_ci1857 -0.8 -2.0 compare
stress LB Anaerobic with Cephalothin 0.0000078125 mM -0.8 -2.1 compare
carbon source carbon source D-Mannose 0.5mM -0.8 -2.1 compare
motility inner cut, LB soft agar motility assay -0.8 -2.0 compare
stress Ciprofloxacin Hydrochloride 0.0003 mM -0.7 -1.2 compare
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM -0.7 -1.5 compare
stress toluene 2.5 vol% -0.7 -2.1 compare
plasmid transformation mariner vector transformation; liquid outgrowth assay -0.7 -2.0 compare
stress LB Anaerobic with Ceftriaxone hemi(heptahydrate) 0.000000625 mM -0.7 -1.9 compare
control PBS_cage_2_mouse_3_Cecum_40 hr -0.7 -1.6 compare
stress 2-Furfuraldehyde 0.25 vol% +0.7 +2.3 compare
carbon source carbon source D-Glucose 20mM +0.8 +1.8 compare
stress Benzalkonium Chloride 0.004 mg/ml +0.9 +2.2 compare
phage Ste41 +0.9 +1.7 compare
phage Papa dilution 10-1 cacl2 maltose +1.1 +4.4 compare