Fitness data for b1990 in Escherichia coli BW25113

erfK: conserved protein with NAD(P)-binding Rossmann-fold domain (NCBI)
SEED: L,D-transpeptidase ErfK

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source Dodecanol and Rhamnolipid (C) -0.6 -2.3 compare
control PBS_cage_1_mouse_1_Cecum_40 hr -0.5 -1.7 compare
stress Trimethoprim 0.005 mM -0.5 -2.0 compare
phage Phage_N4_cage_3_mice _Feces_40 hr -0.4 -2.1 compare
carbon source carbon source D-Glucose 20mM -0.4 -1.6 compare
nophagecontrol R1_N4_T1_phage0 -0.4 -1.6 compare
plasmid transformation mariner vector transformation; liquid outgrowth assay -0.4 -1.8 compare
stress LB Aerobic with Phenazine ethosulfate 0.0000625 mM +0.4 +1.2 compare
stress LB Aerobic with 8-hydroxy-nitroquinoline 0.0000025 mM +0.4 +2.0 compare
motility outer cut, LB soft agar motility assay +0.4 +1.8 compare
stress Bacitracin 1 mg/ml +0.4 +2.1 compare
attachment_assay_attached_sample Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB +0.5 +1.4 compare
phage Ste41 +0.5 +1.7 compare
predation 6 hr rep1_HD100_10fold_dilution_grewON +0.5 +1.8 compare
motility inner cut, LB soft agar motility assay +0.5 +1.8 compare
phage PoolT9D19 +0.5 +1.5 compare
stress LB Aerobic with Irgasan 0.0000003125 mM +0.5 +2.0 compare
phage RB68 +0.6 +3.3 compare
phage RB68 +0.6 +3.3 compare
phage T7_phage 0.00015625 MOI TC4 +0.7 +2.4 compare