Fitness data for b1741 in Escherichia coli BW25113

ydjQ: endonuclease of nucleotide excision repair (NCBI)
SEED: Excinuclease cho (excinuclease ABC alternative C subunit)
KEGG: excinuclease Cho

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
motility outer cut, LB soft agar motility assay -1.5 -1.9 compare
phage Ste41 -1.3 -1.9 compare
plasmid transformation mariner vector transformation; liquid outgrowth assay -1.2 -2.4 compare
plasmid transformation vcDART vector transformation; liquid outgrowth assay -1.2 -2.2 compare
predation 6 hr rep1_HD100_10fold_dilution_grewON -1.0 -1.3 compare
stress LB Anaerobic with Nitrofurantoin 0.00003125 mM -1.0 -2.0 compare
phage T7_phage 0.00015625 MOI TC3 -0.9 -1.4 compare
phage N4_phage 0.00009375 MOI TC4 -0.9 -1.9 compare
motility inner cut, LB soft agar motility assay -0.9 -1.9 compare
control PBS_cage_1_mice _Feces_40 hr -0.8 -1.6 compare
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM -0.8 -1.6 compare
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM -0.8 -2.3 compare
carbon source carbon source D-Glucose 5mM +0.8 +1.3 compare
carbon source carbon source D-Glucose 0.25mM +0.8 +1.7 compare
stress Trimethoprim 0.005 mM +0.8 +1.3 compare
stress LB Anaerobic with Ampicillin 0.00000195313 mM +0.8 +1.2 compare
attachment_assay_attached_sample Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB +0.8 +1.6 compare
phage PoolT9D30 +0.9 +1.6 compare
carbon source carbon source D-Glucose 20mM +1.0 +2.4 compare
carbon source carbon source D-Glucose 0.25mM +1.5 +6.2 compare