Fitness data for b1692 in Escherichia coli BW25113

ydiB: quinate/shikimate 5-dehydrogenase, NAD(P)-binding (NCBI)
SEED: Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)
KEGG: quinate/shikimate dehydrogenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
carbon source carbon source D-Mannose 0.5mM -2.3 -2.5 compare
msc 3hr_MSC_rep2_lowinoculum -1.7 -3.4 compare
attachment_assay_attached_sample Time0_Wash=PBS; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=None -1.5 -3.3 compare
carbon source carbon source D-Mannose 1mM -1.3 -2.9 compare
carbon source carbon source D-Glucose 20mM -1.3 -3.3 compare
vitamin M9 with Pyridoxine HCl 20 nM and 4-Deoxypyridoxine 0.25 uM -1.1 -3.1 compare
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr -1.1 -1.5 compare
stress LB Aerobic with Ramoplanin 0.000125 mM -1.0 -1.5 compare
phage PoolT9D30 -1.0 -1.6 compare
predation 6 hr rep2_HD100_10fold_dilution_grewON -1.0 -1.6 compare
stress LB Anaerobic with Nitrofurantoin 0.000015625 mM -0.9 -1.7 compare
phage PoolT9D18 -0.9 -2.4 compare
motility outer cut, LB soft agar motility assay -0.9 -2.4 compare
stress RCH2_defined_1percent_glucose with Chloride 200 mM -0.9 -3.3 compare
phage T7_phage 0.00015625 MOI TC4 -0.9 -1.5 compare
M9 Acetate 0.5% aerobic -0.9 -3.0 compare
phage RhdML5 +0.9 +1.8 compare
phage Bas60 +1.0 +3.5 compare
plasmid transformation mariner vector transformation; liquid outgrowth assay +1.1 +2.6 compare
control PBS_cage_1_mouse_1_Cecum_40 hr +1.2 +1.6 compare