Fitness data for b1502 in Escherichia coli BW25113

ydeQ: predicted fimbrial-like adhesin protein (NCBI)
SEED: mannose-specific adhesin FimH

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.3)


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group condition fitness t score  
carbon source carbon source D-Mannose 1mM -3.0 -1.7 compare
motility outer cut, LB soft agar motility assay -2.8 -4.9 compare
stress Ciprofloxacin Hydrochloride 0.0024 mM -2.1 -1.4 compare
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr -2.1 -1.5 compare
phage HSDP4 -1.8 -0.9 compare
predation 3 hr rep1_Tiberius_10fold_dilution -1.6 -2.4 compare
micoeukaryotes Tetrahymena sp., Mixed culture-1 -1.6 -0.7 compare
biofilm_assay_planktonic_sample Time0_Wash=PBS; Attachment_time=2hrs; Attachment_surface=PDMS; Biofilm_growth_time=7hrs; Biofilm_growth_media=LB; Sample_type=planktonic; Outgrowth=None -1.6 -2.3 compare
carbon source Ying_AminoAcid20 rep C; time point 3 -1.5 -3.6 compare
nophagecontrol NoPhageControl -1.5 -2.0 compare
carbon source Ying_Others16 rep A; time point 2 -1.4 -2.3 compare
predation 3 hr rep1_Tiberius_10fold_dilution -1.4 -2.6 compare
phage T7_phage 0.000015625 MOI TC5 -1.4 -2.4 compare
M9 Glucose 2% aerobic -1.4 -4.9 compare
predation 3 hr rep1_Tiberius_100fold_dilution -1.4 -2.5 compare
mixed community Mixed culture; Bdellovibrio bacteriovorus str. Tiberius 1:100 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan -1.4 -3.4 compare
attachment_assay_attached_sample Time0_Wash=PBS; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB -1.3 -1.6 compare
carbon source carbon source D-Mannose 0.5mM +1.5 +2.4 compare
stress Trimethoprim 0.005 mM +1.9 +1.3 compare
control PBS_cage_1_mouse_1_Cecum_40 hr +2.1 +2.7 compare